3.1. Can I rearrange the layout of a sequence or alignment for publishing?
You can change the layout using the view settings in the side panel, which are available when your data object is open in the viewing area. If you need more detailed control over e.g. how annotation labels are placed etc, you can export the data in a vector graphics format. To do this, click on the button labelled Graphics in the toolbar, or go to File | Export Graphics and select the Vector graphs (.svg) format.
As svg is a vector graphics format , all the elements in the view can be edited and moved individually using a vector graphics editor.