To trim and assemble sequences, the Workflow needs to contain theTrim Sequences tool and the Assemble Sequences tool. In order to trim all Sanger sequences before providing them as the input for the Assemble Sequence tool, the workflow tools Iterate and Collect and Distribute are added to the Workflow as outlined below. Iterate defines the point in the workflow for the batch unit while Collect and Distribute combines the individual batch results into one input again. For more details refer to the manual entries linked below.
Note: The Trim Sequences tool for trimming of Sanger is available for Workflows from version 21 onwards.
Relevant manual entries:
Trim Sequences https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trimming_using_Trim_tool.html
Assemble Sequences https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Assemble_sequences.html
Creating Workflows: https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Creating_editing_workflows.html
Batch parts of a workflow: https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Running_part_workflow_multiple_times.htmlMore advanced batching option are described on the following manual pages: https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Advanced_workflow_batching.html