The De Novo Assembly tool in QIAGEN CLC Genomics Workbench is based on a de novo assembly algorithm that is equally applicable to transcript and genome assemblies.

For more information on its application, references papers and comparisons to third-party assemblers please see our blog post:

https://digitalinsights.qiagen.com/news/blog/discovery/de-novo-transcript-assembly-using-clc-genomics-workbench/