How to add flanking sequence to variants in the CLC Genomics Workbench?
Go Back There are two different ways in the CLC Genomics Workbench to add flanking sequences to variant information. The first option adds a column to the variant table, which shows the variant including the flanking sequence. The other option creates a new sequence list of the variants with flanking sequences. The first better shows the flanking sequence in context with the variants. If you are going to do further analysis with the sequence information, or need to export it as a sequence list, the second option might be more suitable. In many cases, it may suit the analysis requirements to run both tools.
Adding flanking information to the variant tableGo to the toolbox of the CLC Genomics Workbench: Resequencing Analysis | Variant Annotation | Annotate with Flanking Sequence In the wizard you first choose the variant track, in the next step you choose the reference track and flanking size that you would like to include. This tool is described in our manual here:
Creating a sequence list with the flanking sequence (including the variant)Go to the tool box of the CLC Genomics Workbench: Utility Tools | Extract Annotated Regions In the wizard you,
This tool is described in our manual here: |